CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
نویسندگان
چکیده
منابع مشابه
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
Cap analysis of gene expression (CAGE) is a high-throughput method for transcriptome analysis that provides a single base-pair resolution map of transcription start sites (TSS) and their relative usage. Despite their high resolution and functional significance, published CAGE data are still underused in promoter analysis due to the absence of tools that enable its efficient manipulation and int...
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4 CAGEr workflow 6 4.1 Specifying input files . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 4.2 Creating CAGEset object . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 4.3 Reading in the data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 4.4 Correlation between samples . . . . . . . . . . . . . . . . . . . . . . . . . 9 4.5 Normalization . . . . . . . . . ....
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2015
ISSN: 1362-4962,0305-1048
DOI: 10.1093/nar/gkv054